Oligosaccharride Flippase in
C.jejuni
Alex Schaal and Toby SantaMaria
Contents:
I. Introduction
This is the ABC transporter molecule PgIK--or,
oligosaccharide flippase--in the apo-inward configuration for
Camplylobacter jejuni. Flippases are essential for
cellular functions from cell-cell signaling to cellular transport.
In general, flippases catalyze the flipping of the polar head
groups of oligosaccharides LLO
embedded in the cell membrane to the opposite orientation in the
membrane mosaic. Oligosaccharride flippase is an ATP bound
molecule which flips the orientation of the membrane embedded
lipids. This flippase is composed of 4 identical subunits--a
homotetramer.
In order to flip the membrane,the
pyrophosphate oligosaccharride head group enters the
translocation cavity and interacts with positively charged
side chains while the lipidic polyphrenyl tail binds and
activates the transporter, while interacting with the lipid
bilayer.
II. General Structure
PgIK is a homotetramer
.
It contains 4 alpha helices (TM1, TM2, TM4, and TM5 ) along
with one short alpha helix called EH. Although there are some
beta sheets within the molecule, the external sides of the
molecule are mainly composed of alpha helices and these
helices are what catalyze the flipping reaction. Usually,
molecules of PgIK are found in liposomes or near the cellular
membrane.
The molecule itself is a sort of dimer of dimers; one subunit adopts a
"closed" conformation in which the amino- and carboxy-termini
are closer together than in the "open" subunit. Each subunit
is composed of two distinct domains connected by a
hinge region.
The N-terminal domain is responsible for dimerization and the
carboxy-terminal domain contains a helix-turn helix binding
motif, and is also responsible for bending. Another important
aspect of this flippase is the motif. The LLO-- or, lipid
linked oligosaccharide-- consists of decaprenyl chain
connected to a GlcGalNAc5Bac-phosphate-phosphate chain. This
structure is found in most lipid bilayers, and has its own
binding domain in the molecule PgIK-- the outward facing
cavity. The domain also serves as an ATP biding site, where
ATP is hydrolzyed to catalyze the flipping motion of the
protein.
III. ATPase Stimulation and Binding
An important site for LLO mediated ATPase stimulation
is the External Helix. The EH is
a short alpha helix at the periplasmic boundary which contains
both hydrophobic and
hydrophyllic residues
.
The EH links the LLO structure to the external facing cavity
of PgIK to initiate ATPase stimulation of PgIK. Specifically,
the hydrophobic grooves within the EH act as an anchor to hold
the lipid tail of the LLO and push it into position within the
outward cavity, positioning the pyrophosphate moiety into the
proper position to initiate ATP hydrolysis and initiate the
flipping reaction.These hydrophobic and hydrophyllic sections
within the EH are crucial to the LLO mediated ATPase activity
on PgIK-- without the hydrophobic entities within the EH, LLO
would not be attracted to the outward facing cavity of PgIK.
Then there would be no stimulation by ATPase by the LLO site.
Without the EH, the overall flipping mechanism of the protein
is greatly reduced, although not completely diminished.
Without the EH to bring the LLO into contact with the external
cavity and position correctly within PgIK, PgIK would have to
wait for the LLO to diffuse naturally into the outward facing
cavity. If EH cannot induce the LLO into ATPase activity, this
is called binding failure.
IV. ATP hydrolysis by PgIK and Conformational
Changes
PgIK has both inward and outward facing cavities.
The inward facing cavity houses the 55-carbon long
polyprenyl tail of the oligosaccharide being flipping in the
lipid bilayer--essentially, the tail curls up within the
very bottom and hydrophobic section of the internal cavity.
The outward-facing portion og PgIK is key to ATP hydrolysis
and conformational change neccessary for the flipping
reaction. This wide opening that faces towards the
periplasmic side of the lipid membrane has sufficient space
inside to include the pyrophosphate and oligosaccharide
moeities of the LLO-- these moities serve as both an anchor
point for the pyrophosphate linked oligosaccharide being
flipped, and as a domain where ATP can be hydrolyzed. There
are also multiple arginine residues (Arg86, Arg 260, Arg
302, and Arg 309) which line the interior of the outward
cavity, giving the outer cavity a net positive charge. The
arginines act as anchor points for the pyrophosphate chains
within the LLO structure so that the hydrolysis of ATP can
occur once the LLO itself is within the outward facing
cavity.These arginines later form salt-bridges within the
inner cavity of the PgIK, helping to make the scissoring
motion required for flipping of oligosaccharides in the cell
membrane.
V. Flipping Reaction and Crystal Packing.
The flipping reaction involves the
apo-inward or apo-occluded, ADP bound state changing
conformation to the apo-outward state (ATP bound) state.
The polyprenyl tails of the LLO interacts with the polar
surfaces of the EH; transfering a pyrophosphate into the
outward cavity of the apo-outward state PgIK. Here, the
pyrophosphate has many electrostatic interactions with the
postively charged arginine chains, which in turn pull in
the oligosaccharide to the cavity. The hydrolysis of ATP
then changes the confirmation of PgIK, causing the
molecule to "scissor"--flipping the oligosaccharide in the
process. However, PgIK tetramers are usually found in
"crystal packed" formations Crystal
Packing : meaning that multiple
tetramers or multiple molecules can interact and be bound
to one another. Depending on the nature of the flipping
reaction, PgIK can be packed together at EH-EH units, from
hinge-hinge structures, or from EH-hinge structures.
There are also polar and non-polar groups on the PgIK
homotetramer that allow for asymmetrical packing--
loosely attracted to one another due to the weak
electrostatic interactions between polar sections or van
derWaal's between hydrophobic sections. The beta sheets of the non-binding domain (NBD) do not participate in the binding of LLOs but are thought to participate in these non-polar interactions. These NBD-NBD interactions are important in crystal packing
.
VI. References
Caimlio Perez, Sabrina Gerber,
Jeremy Boilevin, Monika Bucher, Tamis Barbre, Markus
Aebi, Jean-Louis Reymond and Kaspar P. Locher. Structure
and mechanism of an active lipid-linked oligosaccharide
flippase Nature 524:433-438.
Thomas Pomorski, Joost C.m.
Holthuis,Andrea Herrmann, and Gerrit van Meer.Tracking
down lipid flippases and their functions. Journal
of Cell Science 117: 805-813.
Cristina Alaimo, Ina Catrein,
Laura Morf, Cristina L. Marolda, Nico Callewaert,
Miguel A. Valvano, Mario F. Feldman, and Markus Aebi.
Two distinct but interchangeable mechanisms for the
flipping of lipid-linked oligosaccharides. The
European Molecular Biology Organization Journal
25:967-976.
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