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BIOL
113 From Cell to Organism
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UNDER CONSTRUCTION! Last
modified 12/7/2007 MWF 8:10- 9:00 a.m. (Period
1)
M, W, F 9:00 -11:30 a.m.
How to do well in this class:
How to contact the instructor:
Office hours, the weekly review session, and e-mail are the best ways
to make contact with me. You may call me at home before 9:00 p.m.
I am also usually available before class, either in my office or the classroom. Grading: Over many years, the range of average grades on exams in this course is around a 79% and the average grade in the course is B-. A "curve" is needed to translate the raw exam grades into appropriate letter grades. The curve in this course will work in the following way. I will set a grade range for the curve before the exam is administered based on the average exam grades from prior years. Thus, you will not be competing among yourselves, but rather against a fixed curve. If everyone performs very well, then many high grades will be assigned. This policy is intended to encourage cooperation among students in the course, rather than competition. I reserve the right to alter the curve in a way that benefits the entire class, but I will not alter the curve to lower grades. 70%
- 4 exams. The top three will count 20% each, the lowest one 10% Class
attendance and participation:
Attendance is expected, and will be recorded. Excessive unexcused absences
will not be allowed. I will initiate expulsion proceeding for students
acquiring more than 6 unexcused absences. Excused absences will be granted
for students on the excused absence list and for varsity athletics. Exams and quizzes: There
will be 4 exams, each covering the material in that section of the course,
including what is covered in the lecture just prior to the exam. Exam
dates may be moved forward or back. Timing of exams and quizzes will only
be changed with at least one week notice and only after consultation with
the class. The fourth exam is held during the scheduled final exam period,
the other exams are held during the normal class period (or take home).
All 4 exams will count equally in computing the final grade. There will
also be 5 quizzes; some may be take-home assignments. Although none
of the exams is strictly cumulative, you will be held responsible for
major themes we have already covered in the class. If you fail to
show up for an exam or quiz at the scheduled time without my prior approval
(or an absence excused by the deans) then you will get a zero for that
exam or quiz. If you have an excused absence that will conflict with an
exam or quiz (e.g. varsity athletic event) you must contact me one week
before quiz or exam is scheduled to arrange for an alternate time. Ordinarily,
this will be before the rest of the class takes the quiz or exam.
Academic Honesty. Do not lie, cheat, or plagiarize. This class will follow the official Kenyon College position on academic honesty. It is your responsibility to review and observe the official College policy on academic honesty. Special Needs. College policy provides for reasonable accomodations for documented physical, psychological or learning disabilities that may impact your ability to participate fully in the course. Please speak with me and with Erin Salva, Coordinator of Disability Services (PBX 5453; salvae@kenyon.edu). All information and documentation of disability is confidential. Please see the Disability Services web site for more information. Logistical details of any approved accomodation (e.g. extended exam time) must be arranged with the instructor in advance. |
Reading listed as on the p drive
can be found in the following folder p/class/biology/Bio11301fall07.
If specific page
numbers or sections follow a chapter then you are only responsible for those
particular pages or sections.
| DATE | TOPIC & WEBNOTES links | READING -- Color coded |
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8/27
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What is life?
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The pillars
of life (p drive) |
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8/29 |
Prokaryotic
cell structure
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Ch. 7 (up to page 131) |
| 8/31 | Atoms, water | Ch. 2 (sec. 2.1, 2.2, 2.5) |
| 9/3 | Free energy QUIZ 1 | Ch. 2 (sec. 2.3) |
| 9/5 | Origin
of life, amino acids Interview with Stanley Miller |
Ch. 3 (sec. 3.1, 3.2), Table 2.1 pg. 38;
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| 9/7 | Chapter 4 | |
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9/10
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Membranes
I
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Ch. 6 ( pp103-117) |
| 9/12 | Eukaryotic cell
I QUIZ
2 |
Ch. 7 (pp. 131-142), Ch. 28 (615-619, skip box 28.2) |
| 9/14 | Eukaryotic cell II | Ch. 7 (sec 7.4) |
| 9/17 | Viruses, HIV paper: Novel anti-HIV approach (also on p drive) | Ch. 34 (through pg. 792). Essay pg. 335 |
| 9/19 | EXAM 1 | |
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9/21
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Protein folding
and structure
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Ch. 3 (sec 3.3), pH pg. 41-42; pg. 354,
pg. 68- enzyme function |
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9/24 |
Cell signalling-
overview
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Chapter 47 (1076-1083, 1088-1096),
Chapter 8 (section 8.3) |
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9/26
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Protein targeting
pulse
chase animation (optional)
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Ch. 7 (sec. 7.2, 7.3)
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| 9/28 |
Animal hormones- glucose regulation |
Chapter 43 (sec. 43.4) |
| 10/1 | Plant light sensing | Ch. 38 (pg 872, 876 phototropins-877 ), Ch. 39 (39.1, 39.2) |
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10/3
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Membranes
I I
QUIZ
3 take home;
due Monday 10/8 at 9:00 a.m.
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Ch. 6 (6.3, pp 118-123); Ch. 45 (45.1);
Box 36.3 pg. 845 |
| 10/5 |
Neurons |
Ch. 45 (45.2, 45.3) |
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10/8
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October reading
day
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| 10/10 | Nervous system | Ch. 45 (sec 45.4) |
| 10/12 | Sensory systems Nobel prize for olfactory receptors | Ch. 46 (sec 46.1, 46.2, 46.4); Essay pg. 101 |
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10/15
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Ch. 46(sec 46.5)
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10/17 |
EXAM
2- bring cheat sheet. 8.5 x 11 inches double- sided.
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| 10/19 |
Cell respiration overview;
carbohydrates, ATP, redox |
Ch. 5, Ch. 2 (sec 2.4); Ch. 9 (sec. 9.1) |
| 10/22 |
Metabolic pathways, enzymes |
Ch. 3 (sec 3.4) |
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10/24
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Glycolysis and
fermentation
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Ch. 9 (sec. 9.2, 9.5)
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| 10/26 |
Krebs cycles and oxidative phosphorylation |
Ch. 9 (sec. 9.3, 9.4) |
| 10/29 |
Oxidative phosphorylation QUIZ 4 take home due Fri |
Ch. 27 (pp. 594 metabolic diversity-598). |
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10/31
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Photosynthesis
overview
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Ch. 10 (sec 10.1)
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| 11/2 | Light reactions optional animation | Ch. 10 (sec. 10.2, 10.3) |
| 11/5 | Dark reactions, C3 and C4 plants | Ch. 10 (10.4 to end) |
| 11/7 | Summary of metabolism | Ch. 9 (sec 9.6) Integration paper |
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11/9
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EXAM
3- may bring one-sided 8.5 x 11cheat sheet
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| 11/12 | Plant nutrition, nitrogen fixation | Ch. 37; pg. 586 Nitrogen cycle |
| 11/14 | Plant diversity and structure | Ch. 29 (pp. 648-650); Ch. 35 (pp. 804-5, section 35.2) |
| 11/16 | Transport in plants |
Ch. 36, pp.113-115 osmosis |
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11/17-24 |
Thanksgiving
break
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11/26
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Plant strategies
for environmental challenges
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Boxes 36.1 and 36.2 pp. 832-833
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| 11/28 | Temperature regulation Extra credit due(on p drive) | Chapter 41 (section 41.3 to end) |
| 11/30 | Respiration QUIZ 5 no cheat sheet. | Chapter 44 (sections 44.1 and 2) |
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12/3
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Circulation
I
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Chapter
44 (section 44.3)
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| 12/5 | Circulation I I | Chapter 44 (section 44.4) |
| 12/7 | Water and electrolyte balance | Chapter 42 (sections 42.1, 2 and 3) |
| 12/10 | The
kidney optional
animation Information on ADH function |
Ch. 42 (sec 42.4). pg. 1084 - how are hormones involved in homeostasis. |
| 12/15 |
EXAM 4 Saturday Dec. 15th 1:30 p.m. one sided 8.5 x 11 cheat sheet allowed. |
Exam 4 Tomsich 101 1:30 p.m. |