BIOL
113 From Cell to Organism
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UNDER CONSTRUCTION! Last
modified 12/08/2008 MWF 8:10- 9:00 a.m. (Period
1)
M, W, F 9:00 -11:30 a.m.
How to do well in this class:
How to contact the instructor:
Office hours, the weekly review session, and e-mail are the best ways
to make contact with me. You may call me at home before 9:00 p.m.
I am also usually available before class, either in my office or the classroom. Grading: Over many years, the range of average grades on exams in this course is around a 79% and the average grade in the course is B-. A "curve" is needed to translate the raw exam grades into appropriate letter grades. The curve in this course will work in the following way. I will set a grade range for the curve before the exam is administered based on the average exam grades from prior years. Thus, you will not be competing among yourselves, but rather against a fixed curve. If everyone performs very well, then many high grades will be assigned. This policy is intended to encourage cooperation among students in the course, rather than competition. I reserve the right to alter the curve in a way that benefits the entire class, but I will not alter the curve to lower grades. 70%
- 4 exams. The top three will count 20% each, the lowest one 10% Class
attendance and participation:
Attendance is expected, and will be recorded. Excessive unexcused absences
will not be allowed. I will initiate expulsion proceeding for students
acquiring more than 6 unexcused absences. Excused absences will be granted
for students on the excused absence list and for varsity athletics. Exams and quizzes: There will be 4 exams, each covering the material in that section of the course, including what is covered in the lecture just prior to the exam. The last exam will contain a few cumulative questions that will tie together themes we have seen throughout the semester. Exam dates may be moved forward or back. Timing of exams and quizzes will only be changed with at least one week notice and only after consultation with the class. The fourth exam is held during the scheduled final exam period, the other exams are held during the normal class period (or take home). There will also be 5 quizzes; some may be take-home assignments. You will always be held responsible for major themes we have covered in the class. If you fail to show up for
an exam or quiz at the scheduled time without my prior approval (or an
absence excused by the deans) then you will get a zero for that exam or
quiz. If you have an excused absence that will conflict with an exam or
quiz (e.g. varsity athletic event) you must contact me one week before
quiz or exam is scheduled to arrange for an alternate time. Ordinarily,
this will be before the rest of the class takes the quiz or exam.
Academic Honesty. Do not lie, cheat, or plagiarize. This class will follow the official Kenyon College position on academic honesty. It is your responsibility to review and observe the official College policy on academic honesty. Special Needs. Students
with disabilities who will be taking this course and may need academic |
Reading listed as on the Moodle page
can be found at the class Moodle site. If specific page
numbers or sections follow a chapter then you are only responsible for those
particular pages or sections.
DATE | TOPIC & WEBNOTES links | READING -- Third edition | READING - Second edition |
8/29 f
|
What is life?
|
The pillars
of life (moodle) |
The pillars
of life (moodle) |
9/1 |
Prokaryotic
cell structure
|
Ch. 7 (up to page 122) |
Ch. 7 (up to page 131) |
9/3 | Atoms, water | Ch. 2 (sec. 2.1, 2.2, 2.4) Bioskills 4 (B 8-9) |
Ch. 2 (sec. 2.1, 2.2, 2.5) |
9/5 | Free energy | Ch. 2 (sec. 2.3) | Ch. 2 (sec. 2.3) |
9/8 m | Origin
of life, amino acids QUIZ 1 Interview with Stanley Miller |
Ch. 3 (pp. 43-52, 58-60) |
Ch. 3 (sec. 3.1, 3.2), Table 2.1 pg. 38;
|
9/10 | Chapter 4 | Chapter 4 | |
9/12
|
Membranes
I
|
Ch. 6 ( pp. 95-109) |
Ch. 6 ( pp103-117) |
9/15 m | Eukaryotic cell
I QUIZ
2 |
Ch. 7 (pp. 122-134), Ch. 29 (603-609) | Ch. 7 (pp. 131-142), Ch. 28 (615-619, skip box 28.2) |
9/17 | Eukaryotic cell II | Ch. 7 (sec 7.4) | Ch. 7 (sec 7.4) |
9/19 | Viruses, HIV paper: Novel anti-HIV approach | Ch. 35 (through pg. 782) | Ch. 34 (through pg. 792). Essay pg. 335 |
9/22 m | EXAM 1 | ||
9/24
|
Protein folding
and structure
Last day to choose Pass/D/Fail option |
Ch. 3 (sec 3.4), pH pg. 29-30, bioskills 5 B10
pg. 346 (post-translational modifications), pg. 63-64 enzyme function |
Ch. 3 (sec 3.3), pH pg. 41-42; pg. 354,
pg. 68- enzyme function |
9/26 |
Cell signalling-
overview
|
Ch. 47 (pp.1054-1062, sections 47.3 and 47.4), Chapter 8 (section
8.3)
|
Chapter 47 (1076-1083, 1088-1096),
Chapter 8 (section 8.3) |
9/29 m
|
Protein targeting
pulse
chase animation (optional)
|
Ch. 7 (sec. 7.2, 7.3)
|
Ch. 7 (sec. 7.2, 7.3)
|
10/1 |
Animal hormones- glucose regulation |
Chapter 43 (sec. 43.4) | Chapter 43 (sec. 43.4) |
10/3 | Plant light sensing QUIZ 3 take home due 10/8 | Ch. 39 (pp. 857-865) | Ch. 38 (pg 872, 876 phototropins-877 ), Ch. 39 (39.1, 39.2) |
10/6 m
|
Membranes
I I
|
Ch. 6 (review 6.3, pp 110-116); Ch. 45 (45.1);
Box 37.3 pg. 832; box 42.1 pg. 940 |
Ch. 6 (6.3, pp 118-123); Ch. 45 (45.1);
Box 36.3 pg. 845 |
10/8 |
Neurons quiz 3 due |
Ch. 45 (45.2, 45.3) | Ch. 45 (45.2, 45.3) |
10/10
|
October reading
day
|
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10/13 m | Nervous system | Ch. 45 (sec 45.4) | Ch. 45 (sec 45.4) |
10/15 | Sensory systems Nobel prize for olfactory receptors | Ch. 46 (sec 46.1, 46.2, 46.4) | Ch. 46 (sec 46.1, 46.2, 46.4); Essay pg. 101 |
10/17
|
Ch. 46(sec 46.5)
|
Ch. 46(sec 46.5)
|
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10/20 m |
EXAM
2- bring cheat sheet. 8.5 x 11 inches
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10/22 |
Cell respiration overview;
carbohydrates, ATP, redox |
Ch. 5, Ch. 9 (pp. 170- 179) |
Ch. 5, Ch. 2 (sec 2.4); Ch. 9 (sec. 9.1) |
10/24 |
Metabolic pathways, enzymes |
Ch. 3 (pg. 60 -63) last day for WP |
Ch. 3 (sec 3.4) |
10/27 m
|
Glycolysis and
fermentation
|
Ch. 9 (sec. 9.3, 9.7)
|
Ch. 9 (sec. 9.2, 9.5)
|
10/29 |
Krebs cycles and oxidative phosphorylation |
Ch. 9 (sec. 9.4, 9.5, 9.6) |
Ch. 9 (sec. 9.3, 9.4) |
10/31 |
Oxidative phosphorylation QUIZ 4 |
Ch. 28 (pp. 579 metabolic diversity-583). |
Ch. 27 (pp. 594 metabolic diversity-598). |
11/3 m
|
Photosynthesis
overview
|
Ch. 10 (pp. 198-201)
|
Ch. 10 (sec 10.1)
|
11/5 | Light reactions optional animation | Ch. 10 (sec. 10.2, 10.3) | Ch. 10 (sec. 10.2, 10.3) |
11/7 | Calvin cycle, C3 and C4 plants | Ch. 10 (10.4 to end) | Ch. 10 (10.4 to end) |
11/10 m | Summary of metabolism | Ch. 9 (sec 9.8), How do small cells...(pp 571-572) Integration paper |
Ch. 9 (sec 9.6) Integration paper |
11/12
|
EXAM
3- may bring one-sided 8.5 x 11cheat sheet
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|
|
11/14 | Plant nutrition, nitrogen fixation | Ch. 38 | Ch. 37; pg. 586 Nitrogen cycle |
11/17 m | Transport in plants | Ch. 37 (sections 1, 2 and 4) review osmosis pg. 106 |
Ch. 36, pp.113-115 osmosis |
11/19 | Plant strategies for environmental challenges |
Ch. 37 (sec. 37.3, Boxes 37.1 and 37.2) |
Boxes 36.1 and 36.2 pp. 832-833 |
11/21 |
Viruses, HIV paper: Novel anti-HIV approach | Ch. 35 (through pg. 782) | Ch. 34 (through pg. 792). Essay pg. 335 |
11/24-28
|
Thanksgiving
break
|
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12/1 m | Temperature regulation
Quiz 5 handed out |
Chapter 41 (pp. 913-914, section 41.3 to end) | Chapter 41 (section 41.3 to end) |
12/3 | Respiration | Chapter 44 (sections 44.1, 2 and 44.3) | Chapter 44 (sections 44.1 and 2) |
12/5
|
Circulation
I QUIZ
5 due
|
Chapter
44 (section 44.4)
|
Chapter
44 (section 44.3)
|
12/8 m | Circulation I I | Chapter 44 (section 44.5) | Chapter 44 (section 44.4) |
12/10 | Water and electrolyte balance | Chapter 42 (sections 42.1, 2 and 3) | Chapter 42 (sections 42.1, 2 and 3) |
12/12 | The
kidney optional
animation Information on ADH function |
Ch. 42 (sec 42.4) | Ch. 42 (sec 42.4). pg. 1084 - how are hormones involved in homeostasis. |
12/15 |
two- sided 8.5 x 11 cheat sheet allowed. |
Exam 4 Tomsich 101 6:30 p.m. |
Exam 4 - one hour Cumulative test- one hour |