Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference: Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. RID: KGRNATHC013 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 5,633,163 sequences; 1,947,344,958 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Length=364
Distance tree of results Score E Sequences producing significant alignments: (Bits) Value ref|XP_001144896.1| PREDICTED: opsin 1 (cone pigments), long-... 726 0.0 ref|NP_064445.1| opsin 1 (cone pigments), long-wave-sensitive... 710 0.0 emb|CAH18674.1| hypothetical protein [Homo sapiens] 709 0.0 gb|AAD40324.1|AF158968_1 LW opsin [Macaca fascicularis] 705 0.0 gb|AAC25654.1| X-linked visual pigment protein P561 [Callithr... 686 0.0 dbj|BAD97422.1| P560 red-green cone opsin [Cebus capucinus] 685 0.0 gb|AAC25660.1| X-linked visual pigment protein P561 [Cebus oliva 684 0.0 gb|AAC25658.1| X-linked visual pigment protein P556 [Saguinus my 684 0.0 gb|AAC25657.1| X-linked visual pigment protein P561 [Saguinus my 684 0.0 gb|AAC25651.1| X-linked visual pigment protein P561 [Saimiri sci 684 0.0 gb|AAC25661.1| X-linked visual pigment protein P550 [Cebus oliva 682 0.0 dbj|BAD97423.1| P545 red-green cone opsin [Cebus capucinus] 681 0.0 gb|AAC25655.1| X-linked visual pigment protein P556 [Callithr... 681 0.0 dbj|BAD97425.1| P560 red-green cone opsin [Ateles geoffroyi] 681 0.0 gb|AAC25652.1| X-linked visual pigment protein P550 [Saimiri sci 680 0.0 dbj|BAD97426.1| P552 red-green cone opsin [Ateles geoffroyi] 674 0.0 sp|P34989|OPSL_CALJA Opsin, longwave 563 nm >emb|CAA80221.1| ... 673 0.0 gb|AAC05633.1| color vision opsin [Galago senegalensis] >gb|A... 671 0.0 gb|AAD41526.1|AF158974_1 LW/MW hybrid opsin [Macaca fascicularis 670 0.0 gb|EAW72756.1| hCG41347 [Homo sapiens] 670 0.0 gb|AAC25659.1| X-linked visual pigment protein P543 [Saguinus my 666 0.0 gb|AAC25656.1| X-linked visual pigment protein P543 [Callithr... 664 0.0 dbj|BAC15609.1| red-green sensitive cone visual pigment [Aotu... 664 0.0 gb|AAC25662.1| X-linked visual pigment protein P535 [Cebus oliva 662 0.0 ref|NP_000504.1| opsin 1 (cone pigments), medium-wave-sensiti... 661 0.0 dbj|BAD02407.1| red-green sensitive cone visual pigment [Otol... 661 0.0 gb|AAC25653.1| X-linked visual pigment protein P535 [Saimiri sci 661 0.0 dbj|BAD97424.1| P530 red-green cone opsin [Cebus capucinus] 661 0.0 gb|AAD40325.1|AF158975_1 MW opsin [Macaca fascicularis] 660 0.0 gb|AAD16998.1| long-wavelength cone opsin [Phoca vitulina] 654 0.0 sp|O35478|OPSG_SCICA Green-sensitive opsin (Green cone photor... 654 0.0 ref|NP_001009871.1| opsin 1 (cone pigments), long-wave-sensit... 653 0.0 gb|AAP13016.1| long-wavelength sensitive cone opsin [Trichechus 652 0.0 gb|AAP13017.1| long-wavelength sensitive cone opsin [Phoca vitul 651 0.0 gb|AAP13015.1| long-wavelength sensitive cone opsin [Globicephal 651 0.0 gb|AAP13018.1| long-wavelength sensitive cone opsin [Phoca groen 649 0.0 ref|NP_001011506.1| medium-wave-sensitive opsin [Sus scrofa] ... 647 0.0 ref|NP_001075314.1| green opsin [Equus caballus] >gb|AAD30524... 645 0.0 gb|AAT95415.1| LWS pigment [Loxodonta africana] 645 0.0 ref|NP_776991.1| opsin 1 (cone pigments), long-wave-sensitive... 644 0.0 gb|AAW29517.1| medium-wave-sensitive opsin [Spermophilus tridece 643 0.0 ref|XP_538203.2| PREDICTED: similar to Green-sensitive opsin ... 643 0.0 sp|Q95170|OPSR_CAPHI Red-sensitive opsin (Red cone photorecep... 642 0.0 gb|AAP13019.1| long-wavelength sensitive cone opsin [Phocoena ph 640 0.0 gb|AAC12941.1| long-wavelength sensitive cone opsin [Tursiops tr 639 0.0 gb|AAF27288.1|AF139726_1 green cone pigment opsin [Spalax ehrenb 637 0.0 gb|AAP13020.1| long-wavelength sensitive cone opsin [Delphinus d 637 0.0 sp|O18910|OPSG_RABIT Green-sensitive opsin (Green cone photor... 630 5e-179 gb|AAX78227.1| visual pigment [Erignathus barbatus] 629 7e-179 sp|Q9R024|OPSG_CAVPO Green-sensitive opsin (Green cone photor... 629 8e-179 ref|NP_446000.1| opsin 1 (cone pigments), medium-wave-sensiti... 628 1e-178 ref|NP_032132.1| opsin 1 (cone pigments), medium-wave-sensiti... 626 5e-178 gb|AAX78219.1| visual pigment [Zalophus californianus] 625 1e-177 gb|AAD30522.1|AF132041_1 green opsin [Odocoileus virginianus] 624 3e-177 gb|AAX78224.1| visual pigment [Leptonychotes weddellii] 622 1e-176 gb|AAX78220.1| visual pigment [Odobenus rosmarus] 617 3e-175 gb|AAW69833.1| long-wave sensitive opsin [Isoodon obesulus] 616 7e-175 gb|AAX11258.1| long-wave sensitive opsin [Cercartetus concinnus] 615 1e-174 gb|AAZ99878.1| long-wave sensitive opsin [Myrmecobius fasciatus] 614 3e-174 gb|AAX78221.1| visual pigment [Ursus maritimus] 613 4e-174 gb|AAX11257.1| long-wave sensitive opsin [Tarsipes rostratus] 612 9e-174 ref|XP_001508572.1| PREDICTED: similar to long wavelength sen... 612 1e-173 gb|AAW69832.1| long-wave sensitive opsin [Setonix brachyurus] 612 1e-173 gb|AAX78223.1| visual pigment [Mirounga angustirostris] 610 4e-173 gb|AAP37945.1| medium wave-sensitive opsin 1 [Macropus eugeni... 609 9e-173 gb|AAX78222.1| visual pigment [Phoca hispida] 609 9e-173 sp|P41592|OPSR_ANOCA Red-sensitive opsin (Red cone photorecep... 605 2e-171 gb|AAX78226.1| visual pigment [Enhydra lutris] 600 4e-170 gb|AAD38036.1| LWS opsin [Columba livia] 596 8e-169 ref|NP_990771.1| opsin 1 (cone pigments), long-wave-sensitive... 596 9e-169 ref|NP_001070170.1| LWS opsin [Taeniopygia guttata] >gb|AAF63... 593 4e-168 emb|CAA40727.1| iodopsin [Gallus gallus] 592 2e-167 prf||1617123A iodopsin2 592 2e-167 gb|AAC96070.1| red cone visual pigment; rhodopsin [Ambystoma tig 587 5e-166 ref|NP_001096331.1| opsin 1 (cone pigments), long-wave-sensit... 585 2e-165 emb|CAM16265.1| opsin 1, medium-wave-sensitive [Mus musculus] 581 2e-164 dbj|BAE78646.1| M/LWS type opsin LWS-B [Oryzias latipes] 581 2e-164 dbj|BAB32496.1| red-sensitive opsin [Cyprinus carpio] 580 5e-164 dbj|BAE28791.1| unnamed protein product [Mus musculus] 580 5e-164 dbj|BAE78645.1| M/LWS type opsin LWS-A [Oryzias latipes] 580 6e-164 ref|NP_001098164.1| KFH-R protein [Oryzias latipes] >sp|P8736... 579 1e-163 gb|ABB88724.1| red-sensitive visual pigment LWS [synthetic const 579 1e-163 gb|AAV93309.1| putative red sensitive visual pigment [Gauroch... 578 1e-163 gb|AAR14680.1| red-sensitive retinal pigment [Geotria australis] 578 1e-163 gb|AAF63539.1|AF247128_1 putative red sensitive opsin LWS [Oreoc 578 2e-163 ref|NP_001084114.1| red-sensitive cone opsin [Xenopus laevis]... 577 3e-163 gb|AAV93317.1| putative red sensitive visual pigment [Thoraco... 577 4e-163 gb|AAV93310.1| putative red sensitive visual pigment [Astatot... 577 5e-163 gb|AAF63536.1|AF247125_1 putative red sensitive opsin LWS [Di... 576 7e-163 gb|AAZ53189.1| putative red sensitive visual pigment [Tramiti... 576 7e-163 gb|AAZ53187.1| putative red sensitive visual pigment [Pseudotrop 576 8e-163 gb|AAX10027.1| long wavelength sensitive cone opsin [Ophthalm... 576 8e-163 gb|AAV93245.1| putative red sensitive visual pigment [Pundami... 575 1e-162 gb|AAF63537.1|AF247126_1 putative red sensitive opsin LWS [Me... 575 2e-162 gb|AAZ53188.1| putative red sensitive visual pigment [Melanoc... 575 2e-162 gb|AAV93307.1| putative red sensitive visual pigment [Prognat... 575 2e-162 sp|P32313|OPSR_CARAU Red-sensitive opsin (Red cone photorecep... 574 2e-162 gb|AAV93254.1| putative red sensitive visual pigment [Paralab... 574 3e-162 gb|AAV93305.1| putative red sensitive visual pigment [Harpago... 574 3e-162 emb|CAF96877.1| unnamed protein product [Tetraodon nigroviridis] 574 3e-162
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Nov 10, 2007 5:53 PM Number of letters in database: 1,947,344,958 Number of sequences in database: 5,633,163 Lambda K H 0.325 0.135 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 5633163 Number of Hits to DB: 141802103 Number of extensions: 5618212 Number of successful extensions: 19958 Number of sequences better than 10: 1655 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 18928 Number of HSP's successfully gapped: 1716 Length of query: 364 Length of database: 1947344958 Length adjustment: 134 Effective length of query: 230 Effective length of database: 1192501116 Effective search space: 274275256680 Effective search space used: 274275256680 T: 11 A: 40 X1: 15 (7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.0 bits) S2: 79 (35.0 bits)