Biomolecules at
Kenyon
Molecular Modeling with RASMOL
Instructions:
On this page are *.ent text files obtained from the Molecules
R US facility of NIH and the Brookhaven Protein Database or constructed
with the HYPERCHEM molecular modeling program. The files contain the atomic
coordinates of the specified molecule in RasMol and can be viewed with
MDL Chime plug-in. Chime works with IE 5.5 or Netscape 4.7x.
RasMol Links
A Kenyon RASMOL Manual
A Great RASMOL Site:
RasMol
Homepage at U. Mass (Amherst). This site contains a remarkably
comprehensive collection of information about RASMOL plus many applications
and demos.
Original Documentation for RASMOL 2.5: http://www.umass.edu/microbio/rasmol/rasmol.html
Documentation for RASMOL 2.6-beta-2: http://www.umass.edu/microbio/rasmol/distrib/rasman.htm
Information about RASMOL: http://www.umass.edu/microbio/rasmol/rasintro.htm
To obtain RASMOL:
http://www.umass.edu/microbio/rasmol/getras.htm.
This site contains links to download RASMOL for many platforms and other
useful information
Selected molecules:
B-Form
DNA
A-Form
DNA-RNA
Z-Form
DNA
alpha-helix
beta-sheet
A-T
base pair (B-DNA)
G-C
base pair (B-DNA)
A-T,
G-C base pairs (B-DNA)
Klenow
fragment of DNA polymerase I
Beta
subunit of E. coli DNA polymerase III
Beta
subunit pol III--DNA
The
Coil of DNA in a Nucleosome (histone core not shown)
TATA
Binding Protein-DNA
Zinc
Finger Protein, Zif268-DNA
Tramtrack
Zinc Finger Protein-DNA
Gal4
dimer (zinc fingers)-DNA
HIV
Nucleocapsid Zinc Finger-RNA
Bacteriophage
Repressor-Operator
LexA
Repressor (HTH)
Heat
Shock Factor (HTH)
Oct-1-DNA
GCN4
Leucine Zipper-DNA
MyoD
(HLH)
P22
Arc Repressor-DNA
RecA
monomer
RUBISCO
KC
Homepage
Biology
Department
Chemistry
Department
Comments or Suggestions to: Joan
Slonczewski at slonczewski@kenyon.edu