Biochemistry and Molecular Biology Program

Biomolecules at Kenyon

Molecular Biology Tutorials using Jmol

by students from BIOL 263: Molecular Biology and Genomics
C. elegans Tc3 Transposase HTH DNA-binding Motif
van Pouderoyen et al, 1997, Protein Data Bank
Please advise Wade Powell of any corrections.

Jmol, a JavaScript app, is used to display these tutorials.


These tutorials were created by students in collaboration with faculty at Kenyon. Jmol was used to illustrate structural and chemical features of macromolecules. The pdb files were downloaded from the Protein Data Bank of the Research Collaboratory for Structural Bioinformatics.   For each tutorial, the authors listed maintain copyright.

Optional stereo viewing instructions here.  We recommend the Pokescope viewer. Request help here.

Jmol Tutorials

Edited by Daniel Barich '05

2023

Bacterial DnaB Helicase
Keller Bueneman '25 and Ayman Wadud '25
Homo sapiens Beta-Tryptase
Sam Connors '26 and Durwynn Baptiste '25
TtoA from Thermus thermophilus: A Major Outer Membrane Protein
Kayla Arone '26 and Brooke Heis '26
H. sapiens SERCA2a E2.ATP state
Hannah Joo '25 and Bo Huang '25
Human Factor VIII
Ceyda Yazici '26 and Niki Kovacova '25
Mus musculus N-Terminus Cadherin
Logan Gusmano '25 Jinghao Li '25
Human Parathyroid Hormone Receptor 2
Ellie Manning '26 and Linnea Parker '25
Protein Tyrosine Phosphatase SHP2 and Its Link to Cancer
Nike McCune '25 & Denil Joseph '26
Human Cyclin-Dependent Kinase 7 (CDK7)
Alexis Newman '26 and Cat Mori '25
Human Pro-Myostatin Precursor
Matthew Nguyen '26 and Julianna Granetzke '26
Penicillium sp. beta-Galactosidase
Morgan Stucke '26 and Sophia Percy '26
Human Deacetylase Protein HDAC8
Seryne Rafique '26 and Anjali Zumkhawala-Cook '26
Mycobacterium tuberculosis Cyclic AMP Receptor
Katy Spilsbury '25 and Gillian Doty '25
Giardia Intestinalis Dicer Protein
Sydney Srnka '25 and Jordan Herrera '25
Bothrops moojeni MjTX-II Myotoxin
Russell Thomas '26 and Maria Peacock '26

2022

Human FOXA1 protein
Andrew Pilat '25 and Kavya Thaker '25
Mycobacterium tuberculosis response regulator PhoP
Darya Aminia '25 and Minh Pham '23
E. coli Molybdate-dependent transcriptional regulator (ModE)
George Ni '24 and Kelly Zhu '25
D-3-Hydroxybutyrate Dehydrogenase
Justine Cole and Hailey Moss
Phenylalanine-4-hydroxylase
Iris Pardue '24 and Safia Mohan '24
D. drosophila AHR receptor PAS-B domain
Jackson Newell '24
Human and Murine Nanog Homeodomain
Logan Coleman '25 and Cathy Song '24
Aducanumab: An Amyloid-beta Targeted Antibody
Lauren Childs '24 and Isaac Johnson '24
Human thymine DNA glycosylase
Bao Ngoc Dinh '25, Andrew Van Horn '25, and Ryan Yarcusko '25
H. sapiens SCP1 Protein
Grace Potter '24 and Nafeez Ishmam Ahmed '23
Schizosaccharomyces pombe Dcp2-Dcp1-Edc1 mRNA-decapping Complex
Naomi Kennel '25 and Lauren Lehr '25
A COVID-19 Accessory Protein, SARS-CoV-2 ORF3a
Colin Shin '24 and Rachel Chen '24
Homo sapien brain-type creatine kinase
Sydney Buchman '24 and Kod McCune '24
Polo-Like Kinase 1 (PLK-1)
Victoria Osborne '24 and Justin Perdomo '24

2021

Human Lung Surfactant Protein D (h-SPD)
Jacob Smith '23 and Polina Sonin '23
1TEJ from Echis Carinatus: A Heterodimeric Disintegrin Protein
Kit Ross '24 and Zion Snardon '23
Human Voltage-Gated Sodium Channel (Nav1.7)
Maeve Griffin '23 & Hannah Schmidt '22
Myoglobin Oxygen Storage and Diffusion Protein
Carlos Hernandez S. '24, Riley Orth '24, Evan Bongers '23
Human pepsin 3b
Marko Krtinic '24 and Catriona Macintosh '23
Mus musculus Myelin Associated Glycoprotein (MAG)
Lara O'Callaghan '23 and Maggie Williard '23
Homo Sapiens Surfactant Protein D
Eva Illuzzi '24 and Meera Chambers '24
A. Thaliana Rubisco
Brent Henderson '22 and Jack Caine '24
Human Aquaporin-4 Protein
Imani Rucker '23 and Tara Cerny '24
Homo sapiens Protein C
Grace Neuger '24 and Chloe Webb '23
Homo Sapiens Fetal Deoxyhemoglobin
Ubongabasi Asuquo '23 and Serena Liu '23
Yeast Poly(A) Polymerase
Garrett Thesing '24 and Logan Spiess '23
Homo Sapiens WT1 (Wilms'Tumor Protein) Zinc Fingers 2-4
Zachary Baker '24 and Freya Beinart '24
Phosphoribosyl Pyrophosphate Synthetase 1
Grateful Beckers and Maya Vaccaro '24

2020

Human Serum Albumin in the HSA-GA Complex
Drew Albrecht '23 and Joe Boesel '23
Hepatocyte Nuclear Factor 1alpha
Maddy Anderson '22 and Callie Toal '22
Receptor Binding Domain of SARS-CoV2 Spike Protein and the ACE2 Receptor
Victoria Brown '23 and Iggy Nah '23
Human medium chain μ2 adaptin subunit (AP50) of adaptor protein complex 2
Jo Bùi '22 and Isabelle Freeman '23
Rad51 Filament as a DNA Homologous Recombinase
Sofia Rehrig '23 and Erika Conant '23
HIV-1 Tat Protein
Salome Shubitidze '22 and Chris Goodall '22
Aquaporin Z Protein
Anna Harnsberger '23 and Emma Becker '22
S. Cerevisiae SGF29 Tudor Domain
Babiker Higazi '23 and Daniel Frank '23
Hemagglutinin in complex with TBHQ
Thomas A. Kallarakal '23 and Evan Dean '23
Homo Sapiens SPRY Domain of RNA Helicase DDX1
Yangyang Liu '23 and Paige Milhon '23
Prp19/Pso4 Autoinhibited Ubiquitin Ligase
James Martinek '23 and Mattheus Santos '23
Dobamine β-hydroxylase
Kirollos Mikhaeel '22 and Trenton Scherger '23
Polyethylene terephthalate degrading hyrdrolyase enzyme from Ideonella Sakaiensis
Meheret Ourgessa '23 and Beimnet Kassaye '23
D. melanogaster Pumilio-Nos-hunchback RNA complex
Erika Pontillo & Alex Thomas '23
E. coli FNR Transcriptional Regulatory Protein
Rachel Wolters '23 and Colton Morris '23

2019

E. coli Q-beta Replicase Bacteriophage Replication
Lizzy Apunda '22 and Isabel Jaffer '22
D-family DNA polymerase - DP2 subunit
Julia Borys '21 and Sam Schaffner '21
Structure of UvrA nucleotide excision repair in complex with modified DNA in T. maritama
Amir Brivanlou '21 Ishan Mirchandani '20
E. coli RfaH
Paula Cancelas Calvo '22 and Christopher Ponne '22
IkBb/NF-kB p65 Homodimer Complex
Joe Duke-Cohan '22 and Andrew Savidge '21
Homo sapien Serotonin Transporter (hSERT)
Phu Duong '21 and Allison Hector '21
Omega Aminotransferase from P. aeruginosa
Margo Goldfarb '20 and Miriam Hyman '21
PDX1 Pancreatic and Duodental Homeobox 1
Oliver Kendall Sarah Metzmaier
TAL Effector PthXo1
Rebecca Hölzel '22 and Joanna van Dyk '22
Murine Eukaryotic Translation Initiation Factor 4E bound to 7-methyl-GDP
Abby Lee '22 and Sumaya Ahmed '22
IL-2 Immunoregulatory Cytokine Quaternary Complex
Rodaba Rahim '22 and Ben Stillions '22
Human Pax6 Paired-Domain
Alice Tillman '21 and Alanta Budrys '21
OCT 4 cell differentiation transcription factor
Boyu Yang '22 and Maopeli Ali '21

2018

Photinus pyralis (Common Eastern Firefly) Luciferase
Suzanna Bator '20 and Myanna Cook '21
Asparate Aminotransferase K258A Mutant from E. coli
Emily Buckwalter '21, Molly Folks '21
Forkhead box protein (FOXP2)
Shane Canfield '20 and Yoshio Wagner '21
CLOCK:BMAL1
Brad Clegg '20 and Hannah Sklar '20
Hypoxia-inducible Factor 2 Alpha in Complex with Aryl Hydrocarbon Receptor Nuclear Translocator and Hypoxia Response Element DNA
Fielding Fischer '21 and Liana Valin '21
6S Complex: Intermediate in snRNP Core Assembly
Ali Fox '21 and Keely Lovato '20
Homo sapiens Transketolase
Julia Green '20 and Jo Stanley '20
Human TFIIA in the TFIIA-TBP-DNA Ternary Complex
Allison Hector '21 and Callie Gompf-Phillips '21
Ten-Eleven Translocation 2 5-hydroxymethylcytosine (TET2-5hmc)
Marcus Hong '21 and Chris Rutter '20
AHR and its Activating Molecule ARNT Heterodimer: a Transcription Factor's Response to TCDD
Jeremy Kauffman '21 and Ryan Nader '21
EF-G in Complex with GDP and the Ribosome in Thermus thermophilus
Zac LaRocca-Stravalle '21 and Kylie Writer '21
Myelin Oligodendrocyte Glycoprotein
Deveren Manley II '19 and Sarah Dendy '19
Ku Recruitment for the Repair of Double Stranded DNA Breaks
Tobias McCabe '21, Amna Tahir '21, and Jessica Meza '21
Clostridium tetani Tetanus Neurotoxin (TeNT)
Anu Muppirala '19 and Haofan Li '20
U6 snRNP in complex with Prp24
Aidan Ohning '20 and Alex Law '20
Crystal Structure of the Glucocorticoid Receptor Ligand Binding Domain Reveals a Novel Mode of Receptor Dimerization and Coactivator Recognition
Edwin Ramirez '20 and Nicole Steady '21
Human GATA-3
Melissa Skaluba '21 and Lawrence Courtney '21
Homo sapien 5-HT2B Serotonin Receptor Bound to LSD
Kai Wilczewski-Shirai '21 and Charles Adams '21

2017

Exoribonuclease Rat1 and Activating Partner Rai1
Ty J. Boyd '20 and Peter E. Reinhart '20
The Human Prion Protein in Complex with Nanobody 484
Carter Brzezinski '20 and Mackenzie Bruzzio '20
Rattus norvegicus Bifunctional Enzyme and Coactivator Protein, DCoH
Kristen Edgeworth '20 and Natalie Bresnahan '20
Oocyte receptor JUNO Interactions with IZUMO1 Sperm Membrane
Princess Ferguson '20 and Noah Whipskey '20
Halobacterium salinarum Bacteriorhodopsin Protein
Jessie Griffith '19 and Karina Kunka '19
STAT6 Transcription Factor
Hannah L. Hertz '19 and Meredith K. Glover '20
Homo sapiens Galectin-1
Arthur Lian '19 and Weichen Zhao '20
Hemoglobin Transport Protein
Jordan Levin '19
Orthopoxvirus IFN-y-binding protein in complex with IFN-y
Sarah Manz '19 and Becca Allen '19
Viperin: A putative radical SAM enzyme
Jeremy Moore '19 and Sasha Smerakanych '20
Zebrafish P2X Receptor
Naomi Pang '19 and Clare Chou '19
The interaction of IGF-1 with the N-terminal domain of IGFBP-5
Nicolette Peters '19 and Natalie Twitchell '19

2016

CueR: A Copper Efflux Regulator in Escherichia coli
Carolina Andrade '19 and Bryce Nicholls '18
Aspergillus fumigatus Chitinase A1
Adama Berndt '17, Abigail Wilson, and Frederick Josephson
E. coli MGMT Suicide Protein
Benjamin Canniff '19 and David Anderson '19
Human Sperm Cell Surface Protein
Heath Carmichael '16 and Matthew Meathouse '16
Human 9-Subunit Exosome
Wyatt Cole '19 and Tim Lewis '18
Aedes aegypti D7 in Complex with Norepinephrine and Leukotriene
Jack Crow '18 and Chris Link '17
Human DROSHA Protein in Complex with the C-Terminal Tail of DGCR8
Alexandra Hall '19 and Hannah Wendlandt '19
Human 9-Subunit Exosome
Michael Itschner II '18 and Nick Vitale '19
E. coli Multiple Antibiotic Resistance Regulator Protein
Erick Ditmars '18 and Kay Burrows '18
Human Naa60
Julia Josowitz and Ellen Corcoran
XWnt8 in complex with the cysteine-rich domain of Frizzled 8
Emma Klug and Jessica Khrakovsky
Methylmalonate Semialdehyde Dehydrogenase (MMSDH) in Oceanimonas doudoroffii
Andrea Ludwig and Megan Gothard
AP-2 alpha/sigma2 complex bound to HIV-1 Nef
Emma Mairson '17
N-Methyl Mesoporphyrin IX Bound to Human Telomeric G-Quadruplex DNA
Cole Meier and Mason McCool
Active Polycomb Repressive Complex 2
Billy O'Neill '18 and Johnathan Cooper '19
S. cerevisiae Prp8 and Aar2
Emily Olson and Kaylyn Stanton
Escherichia coli Hfq
Anna Tancredi '19
Eukaryotic Release Factor eRF1
Nadia Torok '19 and Hope Giometti '19

2015

Mtr4 RNA Helicase
Elizabeth Abrash '17 and Ulises Arbelo '16
Sonic Hedgehog Protein (SHH)
Keith Adler '17 Morgan Miller '18
Estradiol and the Estrogen Receptor
Ifeoma Archimalo '18 and Sarah Kazzaz '18
Human Tryptophanyl-tRNA Synthetase Recognition and Specificity
Christiana Binkley '17 and Grace Riley '18
Retinoblastoma Binding Protein
Geoff Carney-Knisely '18 and Liz Eder '17
Glycogen Synthase Kinase-3beta (GSK-3beta)
Ren DeBrosse '18 and Katie Kaestner '16
Phosphofructokinase
Scott H. Freeburg '16 and Rachel Schafer '18
Wild Type Core Streptavidin
Nicholas Gutsche '17 and Jack Clayton '17
Human Salivary Amylase
Alexandra Simic Hachmann '17 and Daniel Maffezzoli '17
µ-opioid Receptor
Taylor Jamil '17 and Eliana McCann Smith '17
Streptococcus pyogenes CRISPR-Cas9 in Complex with Guide RNA and DNA
Trevor Manz '17 and Laura Duncan '17
Insulin Interactions with the Insulin Receptor
Taylor Maurer '17 and Morgan Perrett '17
S. cerevisiae Topoisomerase II-DNA-AMPPNP Complex
Jonathan Pang '17 and Kenyatta Viel '17
E. coli Restriction Endonuclease
Caitlin Redak '17 and Ambert Sawaya '17
Oligosaccharride Flippase in C.jejuni
Alex Schaal and Toby SantaMaria
H. sapiens Caspase-3
Alex Seaver '17 and Coire Gavin-Hanner '18
Dronpa: A Photoswitchable Protein Derived from Coral (Pectiniidae)
Maria Sorkin '16 and Emily Bulik-Sullivan '16
Inhibitor Tagetitoxin in Complex with T.Thermophilus RNA Polymerase
Faiza Sulaiman '15 and Kalkidan Aseged '17

2014

Tryptophan Regulated Attenuation Protein (TRAP)
 Caroline Burley '17 and Natalie Plick '16
M. musculus Circadian Rhythm Protein CLOCK:BMAL1
Spencer Byers '16 and Kyle Hardacker '15
H. sapiens Exoribonuclease of viral RNA
  Blake Calcei '16, Brandon January '15 and Alexander McQuiston '16
RNA Polymerase II with Transcription Factor IIB
Jason Cinti ('16) and Issam Hamdallah ('16)
Zaire Ebola VP35 Protein
Kye Duren '16 and Rhea Le '16

S. lividans pH-Gated Potassium Channel
Hardy Evans '15 and Kevin Pan '15
Human Topoisomerase I and DNA Complex
Nat Fox '16 and Yohanna Ewing '16
S. cerevisiae DNA binding protein RAP-1
  Mattias Galliano '15 and Tomas Grant '16
Solanum lycopersicum ACC Synthase
Amanda He '16 and Andrew Pearlman '15
Kasugamycin Function in Thermus thermophilus 30S Ribosomal Subunit: Inhibition of Canonical Translation
Edna Kemboi '16 and Jiayu Chen '17
The Exon Junction Complex
Charlotte Leblang '16 and Daniel Jurgens '16
E. coli Aspartate Transcarbamoylase (ATCase)
Allen Sanderlin '15 and Kaitlin Creamer '16
HIV Viral Infectivity Factor BC-box in complex with ElonginB and ElonginC
David Torres '16 and Joey Duronio '16


2013

Serotonin (5-HT1B) Receptor Bound to Ergotaminerchaeal
Jourdan Cline '15 and Johanna Klinman '15
Enhanceosome factors ATF-2/c-Jun and IRF-3 complexed with the interferon-beta enhancer
Oliver DeBarros '15 and Nate Petrou '15
Rhodopsin GPCR
Katharina Devitofranceschi '14 Noah Winters '15
Homo sapiens Tyrosine Kinase Domain of Fibroblast Growth Factor Receptor 1
Luke Kresslein '15 and Lillian Spetrino '15
Telomerase Catalytic Subunit TERT in Tribolium castaneum
Shirley Lu '15 and Nicole Valentini '14
Activation and Regulation of Human Mitochondrial Transcription Factor A
 Kelsey McMurtry '14 and Wesley Manz '15
H. sapiens Transcriptional Coactivator p300/CREB-Binding Protein Associating Factor (PCAF)
Camelia Milnes '15 and Shannon Wright '16
Uracil-DNA Glycosylase
  Rei Mitsuyama '15 and Holden Richards '15
Human FEN1-PCNA Complex
  Maria Narvaez '14 and Hailey Schneider '14 
Domain 2 of the Saccharomyces cerevisiae DEAD-Box Helicase Mss116p
Cristina Nunes '15 and Robert Turlington '16
Epstein-Barr Virus ZEBRA Protein DNA Binding Domain
Alexander Oles '16 and Stephanie Penix '16
 Human DNA Ligase IV-Artemis Fragment Complex
 Sean Smith '16 and Samantha White '16
Homo Sapiens Transforming Growth Factor, Beta-III
Jonathan Sun '16 and Stephanie Cordonnier '15

2012

Archaeal Cyclobutane Pyrimidine Dimer Class II Photolyase in Complex with UV Damaged DNA
 Kelsey Dillon '14 and Jenny Shoots '14
Dihydropteroate Synthase
Lyra Hall '14 and Rina Petek '15
Iron Regulatory Protein 1 in Complex with Ferritin IRE-mRNA: the Moonlighting Form of c-Aconitase
Michael Harden '14 and Marta Hamilton '14
Homo sapien Liver X Receptor Beta
Kelly Heilman '12 and Crystal Piras '12
Oligoduplex Structure and Dimethylated DNA Base-Flipping Activity of the N-terminal Domain of E. coli Endonuclease McrB
Maggie Koenecke '15 and Eric Engelbrecht '14

Homodimeric Structure and DNA-Binding Activity of the Tyrosine Phosphorylated STAT-1 Dimer
Ainsley Lockhart '13 and Kendra Lechtenberg '13
Crystal Structure of the Beta-2 Adrenergic Receptor-Gs Protien Complex
Andrew Maurer '14 and Sam McQuiston '14
Binding Pocket Specificity and Key Amino Acids
Zach Morrow '14 and Kotiba Malek '14
Human Pancreatic RNase 1 in Complex with the Human Ribonuclease Inhibitor Protein
Mithzy Pena '14 and Haley Dugan '14
Structure of Estrogen Related Receptor Gamma in complex with Bisphenol A
 Ian Richardson and Myles Alderman
Ultraviolet Damage Endonuclease
Q Tashiro '15 and Rachel Rhee '15
Human Argonaute 2
Scott Watters '14 and Stephen Raithel '13

2011

Oct and Sox POU/HMG/DNA complex
Ariel Bartholomew '13 and Kate Haller '13
Staphylococcus aureus PBP4 in complex with ampicillin Joshua Bloom '13 and Kushal Rao '13
Prototype Foamy Virus (PFV) Intasome Clara Fischman '13 and Katie Adlam '13
Homo sapiens Liver X Receptor Beta
Kelly Heilman '12 and Crystal Piras '12
Structural Basis for Complex Formation of GCN5 Histone Acetyltransferase with H3 and Coenzyme A
Harry Hurley '14 with Michael Gallaher '14
Structure of RNA-Dependent RNA Polymerase in Bacteriophage ?6
Hildy Joseph '13 and Samuel Kaplan '14
UCHL3 in Plasmodium falciparum
Morgan Korinek '12 and Andrea Pohly '12
Structure and Function of DNA Methyltransferase 1 Willie Miller-Little & Austin Griffin
Selenoenzyme Glutathione Peroxidase
Sam Pletz '13 and Jimmy Chapman '13
Tetrameric Structure of IRF-3 with DNA
Andy Schwartz '12 and Luke Sullivan '12
Homodimeric DNA-Binding and Ligand-Binding Interactions of Human Thyroid Hormone Receptor
Justin Taft '13, Andrew Gipson '13, and Patrick Mershon '14
HIV Capsid Protein
Kelly Wahl '12 and Kiersten Bell '13

2010

Tyrosine kinase Hck
Sarah Cook '11 and Sally Moseley '12
BmrR, A Transcription Activator in Bacillus spp.
Emma R. Cummins '13 and Kari N. W. Deininger '13
RNA Polymerase PB1-PB2 subunits from Influenza A Virus Brittany Currey '11 and Lauren Brady '11
The oxidative-stress sensor SoxR bound to DNA
Gian Garduque '12 and Jill Pattison '12
Homo sapien Liver X Receptor Beta
Kelly Heilman '12 and Crystal Piras '12
Cyclophilin B: A Prolyl Isomerase
Shante Jackson '13 and Irene McIntosh '13
E. coli Shiga 2 Toxin
Rachel Martin '11 and Daniel Riggins '12
Proliferating Cell Nuclear Antigen Interactions with Translesion DNA Polymerases
Lars Matkin '12 Nickolas Tun '12
Homodimeric Structure and Double-stranded RNA Cleavage Activity of the RNase IIIb Domain of Human Dicer
Mary Myers '12 and Brian Thorne '12
Noggin BMP-7 Protein Complex
Hannah Regan '12
p300/CBP Transcriptional Coactivator
David Sowa '12 and Sonam Lhaki '12
Type II Restriction Endonuclease HinP1I
Aaron Yeoh '12 and Nathan Huey '13

2009

The Ancestral Protein of the Glucocorticoid Receptor (GR) and Mineralcorticoid Receptor (MR)
Haley Adcox '11 and Cami Odio '11
Ebola Virus Surface Glycoprotein Complexed with Fab KZ52 Antibody
Clay Brown '10 and Keith Miller '12
M. tuberculosis Antigen 85B
Kat Meagley '11 and Suzanne Rohrback '11
B. stearothermophilus Adenine DNA Glycosylase Protein MutY
Elizabeth Bailey '12 and Jonathan Weil '11 
Fas-FADD Death Domain Complex
Jackie Shirreffs '11 and Mac Woods '10
Plasmodium falciparum Histo-Aspartic Protease (HAP) Protein
Kerri-Lynn Conrad '11 and Chinagozi Ugwu '10
Sodium-Potassium Pump
Monica Kriete '11 and Mary Clare Higgins-Luthman '11

2008

Integration Host Factor
Josh Weber '11 and Phan Truong '11

LAGLIDADG Homing Endonuclease I-CREI
Christian Hinderer '10 and Nora Pencheva '09

Zif268 Zinc Finger Transcription Factor
Robert Carpenter '10 and Emily Nutt '10
Human Tissue Kallikrein 4
Anna Frutiger '09 and Paige Roberts '09
CDK2 in Complex with Synthetic Inhibitors
Jennifer L. Howard '09 and Emily K. Staudenmaier '10
E. coli TolC Multidrug Efflux Pump
Katie Sears '10 and Kristina Buschur '11
HIV-1 Protease and Inhibitor Complex
Kaleb Keyserling '09 and Ken Noguchi '10 
Interactions of HIV-1 Envelope Protein gp120 with the Cellular Receptor Protein CD4 and the CCR5 Co-Receptor Mimic 412d Antibody
 James Beckett '11 and Maggie Taylor '11 
B. subtilis Multidrug Transporter
Jake Calcei '09 and Ben Alexander '09 
Oxytricha nova telomere end-binding protein
Jay Galbraith '09 and Mark Luskus '10

2007

The restriction endonuclease BglII
Leo Laub '09

The ?2?2 Antitoxin/Toxin System
Danny Iwamoto '10 and Basil Kahwash '10

p53 Core Domain Bound to DNA
Jane Robertson '08 and Allison Mauk '08
Tetracycline Repressor Complex
Amy Goshe '09 and Sasha Minium '09
Matrix Protein VP40
Sarah Cleeton '09 and Rebecca Cleeton '09
Nova-1 KH3 K-Homology RNA-Binding Domain
Kenny Farabaugh '10
Rho Termination Factor
LaDean Cooley '09 and Piero Sanfilippo '09
Tn5 Transposase
Emma Wampler '09

2006

Human ABAD/HSD10 with Bound Inhibitor, AG10851
Anna Zimmermann '07 and Ann Downer '08
Human BRCT Domain of BRCA1
Brian Steginsky '06 and Alexis Marino '09
Human PTP1B-IRK
Delia Turner '08 and Blaise Milburn '07
Replication Protein A
Amar Desai '08 and Michael Northcutt '08
Plasmodium falciparum Apical Membrane Antigen 1 (AMA1)
Marilyn Haas '08 and Susannah Fulling '08
Human TFIIB in the TFIIB-TBP-TATA-Element Ternary Complex
Josh Cowgill '08, Nick Fanning '08, and Albert Coombs III '07

Archived tutorials from 1998-2005

The Interaction Between Sildenafil (Viagra™) and Human Phosphodiesterase 5A
Casey Smith '06 and Lauren Kordonowy '06

Pyrococcus furiosus Argonaute
Rebecca Schnitt '05 and Robert Northrup '05
Leptin-E100, the obese protein
Josephine Comas Bardot '08 and Ryan Ruffing '07
Herpes Simplex Thymidine Kinase
Tim O'Neal '07 and Clayton Smith '07
Catabolite Activator Protein in Escherichia coli
Marla Fiorelli '99
T4 Bacteriophage Cell-Puncturing Device
 Clint Priestley '03 and Matt Schefft '0
Streptococcal Pyrogenic Exotoxin A1
Joel Beckett '08 and Andy Boylan '08
Anthrax Protective Antigen and Lethal Factor
Ansley Scott '02 and Dawn Stancik '02
HIV-1 reverse transcriptase
Oliver Benes '03, 

Rebecca Burke '03, Rebecca Palacios '03
Tamoxifen, Diethylstilbesterol and Estrogen Receptor 
Sara Pecorak '04 and Tom Susman '04
The DNA-Binding Domain of Hin Recombinase Elizabeth E. Millard '98, Aaron Downs '00, and David Marcey
Transfer RNA and its Interactions with Seryl-tRNA Synthetase Michael W. Hapiak, '99
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